PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00004.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 227aa    MW: 25170.5 Da    PI: 10.5268
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00004.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-1672123256
                      AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                              +ykGVr+++ +g+++AeIrdp   + + +r +lg++  +e+Aa a+++ + kl+g+
  Itr_sc000022.1_g00004.1  72 RYKGVRRRP-WGKFAAEIRDP---NrRGARLWLGTYERPEDAALAYDREAFKLRGA 123
                              7********.**********9...4334*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-2672132No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2972131IPR001471AP2/ERF domain
PfamPF008476.1E-1172122IPR001471AP2/ERF domain
SMARTSM003803.7E-3272136IPR001471AP2/ERF domain
PROSITE profilePS5103223.44672130IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2172131IPR016177DNA-binding domain
PRINTSPR003671.1E-117384IPR001471AP2/ERF domain
PRINTSPR003671.1E-11112132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MESEFDFAFL DSLQQHLLDD SDFPEIFAAI DQCGNSSAVI GGGSPELWEV QKATSGAARE  60
DFSPPPPRDW RRYKGVRRRP WGKFAAEIRD PNRRGARLWL GTYERPEDAA LAYDREAFKL  120
RGARALLNFP HLIGSNVPAP VRVKPRRRSL PKASSPASLS TESGIGAPKR RKISIINSLA  180
AKINLDRGNP LALWSSPVYF PTRATSLASA LPHLSRAFSD YTIQPSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2771135468ATERF1
3gcc_A5e-2771135468ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010325364.15e-54PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ404797e-39ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLK4AYX26e-54K4AYX2_SOLLC; Uncharacterized protein
STRINGSolyc01g090310.2.12e-53(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-33ethylene-responsive element binding factor 13